PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09122.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 226aa    MW: 25806.7 Da    PI: 9.8003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09122.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-124693355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               + h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  PK09122.1 46 KDHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYMKQLQ 93
               56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0694392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1747110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1747107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-104793IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-114897No hitNo description
SMARTSM003533.1E-144998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
XDGLKNNNTT SNFLPSDCVV KVANHQGANC NKRLINSTST KLSQTKDHIL AERKRREKLS  60
QRFIALSAIV PGLKKMDKAS VLGDAIKYMK QLQERVKILE EEMRKRNMES VVFVRKFQLI  120
ADKDSNSPSY SSDENYSSFD EPLPEIEARV CDKNVLIRIH CEKKKGVMEK TIVEIEKHHL  180
TIINTSCMTF GTSSLDLTII AQMNMEFSLT MKDLVKNLRL AFSLFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-154796857Transcription factor MYC2
5gnj_B8e-154796857Transcription factor MYC2
5gnj_E8e-154796857Transcription factor MYC2
5gnj_F8e-154796857Transcription factor MYC2
5gnj_G8e-154796857Transcription factor MYC2
5gnj_I8e-154796857Transcription factor MYC2
5gnj_M8e-154796857Transcription factor MYC2
5gnj_N8e-154796857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERKRRE
25257RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107640.21e-106transcription factor bHLH18
SwissprotQ9T0722e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P5ECZ51e-108A0A2P5ECZ5_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010107640.11e-106(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-59bHLH family protein