PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09138.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 187aa    MW: 21651.8 Da    PI: 6.3607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09138.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.9e-114613798
               EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               +l  +sg+ Wev+l  +k +++++++ GW+eFv+   +  g  ++F+++g+sef  +v +++
  PK09138.1  4 KLIVPSGQFWEVRL--EKVDNKIWFKHGWQEFVNFYSISYGNLLIFRYEGESEF--HVCILN 61
               677899********..*********************************99999..998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.619163IPR003340B3 DNA binding domain
CDDcd100179.46E-11261No hitNo description
SuperFamilySSF1019361.71E-14362IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-14462IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-7761IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
XVAKLIVPSG QFWEVRLEKV DNKIWFKHGW QEFVNFYSIS YGNLLIFRYE GESEFHVCIL  60
NNTFTEIDYP IPLNDLSSNF VDPNLDNEIH LQLPHSSSKT RIVNKLGDKQ VFKRVQTPLS  120
NPKTERSNKI FRTNAASIDC TKASRAVKTE EETPVEQSGY ANVPRSSAKM EKEENFFLNH  180
EENTNLX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2179134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-22B3 family protein