PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09356.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 236aa MW: 26383.5 Da PI: 9.2656

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09356.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.8	2.5e-10	2	30	61	89
E-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 61 ltkGWkeFvkangLkegDfvvFkldgrse 89 +++GWk Fv++n+Lk+gD++vF l +rs+ PK09356.1 2 IESGWKAFVQDNDLKVGDVCVFVLRKRSG 30 579********************877543 PP
2	B3	35.6	1.6e-11	140	232	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+ +l+p + ++++++p +a+ +kk++ t+tl W v+++ +k s+ y +++GW+ F+++n L+ D+++F l+++++ e PK09356.1 140 FQVKLKPYNLRGHAQVYIPLAYANPWFEKKPQ--TVTLWV-GEDYWHVTVTLNKASNIggleYRFSAGWRAFARDNSLNPSDVCIFDLIKKNKPEI 232 6677777777778999****9776766555..666554.668899999888888878889***********************998544433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.082	1	42	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-7	2	29	IPR003340	B3 DNA binding domain
CDD	cd10017	5.48E-10	2	39	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.0E-9	2	40	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-9	3	39	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.1E-17	135	233	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.88E-15	135	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.65E-13	138	228	No hit	No description
PROSITE profile	PS50863	10.489	140	236	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-8	140	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
XIESGWKAFV QDNDLKVGDV CVFVLRKRSG VILFEVVIFY DNGLANSPIQ QIPAANKTSS 60 TPCVKIEPSS TSNNYDKAIM IPHDIIANKK VIEPSEKFTK PVSEENTGNQ GTNNNKRPSS 120 SGLGIASEAA IKFFSDNPYF QVKLKPYNLR GHAQVYIPLA YANPWFEKKP QTVTLWVGED 180 YWHVTVTLNK ASNIGGLEYR FSAGWRAFAR DNSLNPSDVC IFDLIKKNKP EIKVTX

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14300	4	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	9e-12	related to vernalization1 1