PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09358.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 311aa MW: 34089.9 Da PI: 7.0173

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09358.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.4e-39	65	121	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + +kcprC+st+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk PK09358.2 65 ALVKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKK 121 6789***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-26	57	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.3E-33	66	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGFTSVQVCM DLSSDWLQGT IHEDSSGIDS SSPSNDNILT YSKPTIMEQQ QQQQQQRLRP 60 PNDNALVKCP RCESTHTKFC YYNNYSLTQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK 120 KPAPKKTNDN NSAVVLINTK NNHNNGGGDD IGGSTSTTDL KLSFPDQVQF SHLSNLLGTH 180 GPGPNSFFES PRPIDFGMVG IGLGNISNSS SHHHGIIEPN NFHGLCSPFG MSLDGTGTGT 240 FMDTCQRIMM SYEGNDDDQK YGIDVKPNAK LLALDWQDHG GCTDAGKDSF GYLNSLGLMN 300 NYGPPTMNPL V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021292203.1	1e-117	dof zinc finger protein DOF5.6
Swissprot	Q9FM03	5e-41	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A2P5AF62	1e-117	A0A2P5AF62_PARAD; Zinc finger, Dof-type
STRING	XP_010101217.1	1e-115	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	8e-37	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]