PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09429.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family E2F/DP
Protein Properties Length: 186aa    MW: 21219.9 Da    PI: 8.4572
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09429.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP42.79.1e-144592570
    E2F_TDP 25 vtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70
               + l+++ak L  +       ++k+RR+YDi+NVL+++nliek     + k+++rw 
  PK09429.1  4 ILLENAAKGLPGDaedptALRTKVRRLYDIANVLSSMNLIEKirhpdSGKPAYRWL 59
               5678888888666888888899***********************9999******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.9E-4260IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-8559IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.9E-11659IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-112359IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDLILLENAA KGLPGDAEDP TALRTKVRRL YDIANVLSSM NLIEKIRHPD SGKPAYRWLC  60
WGAKTKNEID NTDSNQPIKR IFGADLTNYN FKRKREDTTE DCKSNQEKSK QKICKSSELE  120
QNECVCDDEE VKPRPKYASK GIVFGPFAPI SLAMEGDAAN KRVRQVQDWE SLASTYRPQY  180
RNQGTF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018493.11e-77E2F transcription factor-like E2FF
TrEMBLA0A2P5DRU56e-93A0A2P5DRU5_TREOI; E2F Family
STRINGXP_010091943.11e-75(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2177434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.12e-33DP-E2F-like 1