PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09499.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 190aa MW: 21778.3 Da PI: 11.0645

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09499.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	125	178	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PK09499.1 125 PRMRWTTSLHSRFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 178 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.73E-16	122	179	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-29	123	179	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-24	125	178	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-8	126	177	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
XPWIRRIDNF PSRSERKQSS SSSSPTRFSS DNHQMKTKTI KGIPIYNNNN TPSDQLRLRS 60 DGAVCFGGGY SKLYYSHQQI PPYPNLLPIS LPSSRVYNPS MENRVHHHHN HNQFGNNSKR 120 NMRAPRMRWT TSLHSRFVHA VQLLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK 180 NTDKPMASSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-17	126	180	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	126	180	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	126	180	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	126	180	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	126	180	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088450.1	6e-45	transcription repressor KAN1 isoform X1
Swissprot	Q9C616	9e-40	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2P5E159	6e-45	A0A2P5E159_PARAD; KANADI transcription factor
STRING	cassava4.1_008805m	4e-43	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1756	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-40	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]