PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09561.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 223aa MW: 25636.8 Da PI: 10.6783

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09561.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.7e-17	130	216	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k++++s+v+ +l lp +f++++ +k ++ +tl de+g++ + + rk++ l++GWk+F+ a++L +gD ++F+l++ s f +v PK09561.1 130 FIKTMLQSHVTGGFWLGLPVHFCRKNL-PK-RDEVMTLIDEDGEEHKTVYLARKTG----LSGGWKGFAVAHNLVDGDALIFQLIRPSAF--KVF 216 89*******************9994.33.5568***********656665....***********************98888..444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-21	122	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-25	123	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.06E-27	128	219	No hit	No description
SMART	SM01019	2.0E-23	130	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.857	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-15	130	217	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MVMAKSKISY EESRRQRLEE NKQRMEALNL TMLAQSLRNS SPSKLSPMKS VKKPRTMEKQ 60 VVMVRRSSRV ANKPIPVYNE VVIERVVIPR RISKHRDLSN RVYASDEART NALERAEKLL 120 SELESEYPIF IKTMLQSHVT GGFWLGLPVH FCRKNLPKRD EVMTLIDEDG EEHKTVYLAR 180 KTGLSGGWKG FAVAHNLVDG DALIFQLIRP SAFKVFIIRV NSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092061.2	1e-119	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	2e-77	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2P5ASS8	1e-136	A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein
STRING	EOY14512	1e-117	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-77	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]