PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09781.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 168aa    MW: 18936.9 Da    PI: 9.1163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09781.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.4e-07142164225
        AP2   2 gykGVrwdkkrgrWvAeIrdpsen 25 
                +y+GVr ++ +g+++AeIrdp+ +
  PK09781.1 142 HYRGVRKRP-WGKYAAEIRDPNRR 164
                7********.**********9443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-10141168IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-5142167IPR016177DNA-binding domain
PROSITE profilePS5103212.128142168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MALEGEVTTL ELIRQHLLND FGSMDSFINS LNNCTANINT QNQTNHIDHD YSFSSQINQS  60
FKVPKKETTN NDDYCEEANH SFEFQTKLNT SVNTRGHYSK PSSLSQRRPS INVAIPPANS  120
PVPVKVPAMS SSVSDNAPDS RHYRGVRKRP WGKYAAEIRD PNRRGSRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029721.14e-45ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2P5BQN21e-50A0A2P5BQN2_PARAD; AP2/ERF transcription factor
STRINGXP_008234445.14e-33(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.16e-19ethylene responsive element binding factor 6