PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09831.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 404aa    MW: 45956.9 Da    PI: 4.9688
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09831.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye++ed+++++++sws++++sf+v+++ efa+++Lp++Fkhsnf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +ll++i+
     PK09831.1  14 FLAKTYEMVEDPSTDTVVSWSSSNKSFIVWNPLEFARDLLPRFFKHSNFSSFIRQLNTYGFRKVDPEQ---------WEFSNDDFLRGQPQLLKNIH 101
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     PK09831.1 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-359103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDESQGGSNS LPPFLAKTYE MVEDPSTDTV VSWSSSNKSF IVWNPLEFAR DLLPRFFKHS  60
NFSSFIRQLN TYGFRKVDPE QWEFSNDDFL RGQPQLLKNI HRRKPVHSHS LQNLQGQGTP  120
QLAESERQSL KDEIERLQHD LQELAVESQR YENERRALEI QKCGLKEQFH KSEQQQQGIV  180
SLLSQVLQKR GFAVNFSQLE ANVRKRRLPK IGTKDNSTGS PELLRIDNVG NSVLNLIVDK  240
VEQLEASLLF WEDIVHDFSN VHLQSSSNIE LDESTGCAES PSISCVQLNI DIRSKSPGID  300
VNSDPAPIVT SEPFVAKEQS VKEPENAATT TATVRTGAND VFWEQFLTEN PGSSDTQEVQ  360
SERKDSDERR NENNPGDRGK FWWSMRNVNN LTEQMGHLTP AEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-25610312120Heat shock factor protein 1
5d5u_B1e-25710322129Heat shock factor protein 1
5d5v_B1e-25710322129Heat shock factor protein 1
5d5v_D1e-25710322129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088011.10.0heat stress transcription factor A-4a
RefseqXP_024024371.10.0heat stress transcription factor A-4a
RefseqXP_024024376.10.0heat stress transcription factor A-4a
SwissprotO494031e-117HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2P5BDT70.0A0A2P5BDT7_PARAD; Heat shock transcription factor
STRINGXP_010088011.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-118heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]