PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09831.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HSF

Protein Properties

Length: 245aa MW: 28305.7 Da PI: 7.1672

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09831.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.8	1.1e-35	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye++ed+++++++sws++++sf+v+++ efa+++Lp++Fkhsnf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +ll++i+ PK09831.2 14 FLAKTYEMVEDPSTDTVVSWSSSNKSFIVWNPLEFARDLLPRFFKHSNFSSFIRQLNTYGFRKVDPEQ---------WEFSNDDFLRGQPQLLKNIH 101 9*************************************************************9998.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k PK09831.2 102 RRKP 105 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	6.53E-36	9	103	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.3E-38	10	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.0E-61	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.6E-32	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-20	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-20	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-20	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDESQGGSNS LPPFLAKTYE MVEDPSTDTV VSWSSSNKSF IVWNPLEFAR DLLPRFFKHS 60 NFSSFIRQLN TYGFRKVDPE QWEFSNDDFL RGQPQLLKNI HRRKPVHSHS LQNLQGQGTP 120 QLAESERQSL KDEIERLQHD LQELAVESQR YENERRALEI QKCGLKEQFH KSEQQQQGIV 180 SLLSQVLQKR GFAVNFSQLE ANVRKRRLPK IGTKDNSTGS PELLRIDNVG NSVLNLIVDK 240 VEQLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-27	7	103	22	129	Heat shock factor protein 1
5d5v_B	7e-27	7	103	22	129	Heat shock factor protein 1
5d5v_D	7e-27	7	103	22	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269\|PubMed:18381353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269\|PubMed:18381353}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088011.1	1e-121	heat stress transcription factor A-4a
Refseq	XP_024024371.1	1e-121	heat stress transcription factor A-4a
Refseq	XP_024024376.1	1e-121	heat stress transcription factor A-4a
Swissprot	Q9FK72	1e-80	HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBL	A0A2P5BDT7	1e-131	A0A2P5BDT7_PARAD; Heat shock transcription factor
STRING	XP_010088011.1	1e-120	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3568	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	6e-83	HSF family protein

Publications ? help Back to Top
Faragó D,Sass L,Valkai I,Andrási N,Szabados L PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro. Front Plant Sci, 2018. 9: p. 219 [PMID:29520290]