PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09848.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 200aa    MW: 22750 Da    PI: 9.7867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09848.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-066082123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  PK09848.1 60 FVCEICNKGFQRDQNLQLHRRGH 82
               89*******************88 PP
2zf-C2H217.41.3e-05136158123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ C+k +  +s+ k H++t+
  PK09848.1 136 WKCERCSKKYAVQSDWKAHMKTC 158
                58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.0E-65982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.03E-75982No hitNo description
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
PfamPF121712.4E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355250101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.03E-7131157No hitNo description
SMARTSM0035577136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEVSTVSAGE ASMSSPGFQT SPVPLEVVIP KKKRNLPGMP DPDAEVIALS PNTLMATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTKEIRKRV YVCPEASCVH HNPARALGDL  120
TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL FSRRDSFITH  180
RAFCDALAEE SARSQALEIX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-37132197368Zinc finger protein JACKDAW
5b3h_F1e-37132197368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028794491.11e-126zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
RefseqXP_028794492.11e-126zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
RefseqXP_028794493.11e-126zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
RefseqXP_028794494.11e-126zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X2
SwissprotQ9LVQ71e-117IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2P5FZB71e-136A0A2P5FZB7_TREOI; TFIIH C1-like domain containing protein
STRINGXP_002510356.11e-125(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-119C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]