PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09859.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 64aa    MW: 7250.15 Da    PI: 8.5113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09859.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS46.85.2e-15264297360
       GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                +++ceg +r+erhe++ +Wr+r+++aGF++ p++  +  +ak  l +++  +gy+v ee+g+lvl
  PK09859.2   2 IISCEGPARVERHERVDQWRRRMSRAGFQAGPIK--MLGSAKQWLGQIEaCEGYTVVEEKGCLVL 64 
                89******************************96..678899999999999************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.681159IPR005202Transcription factor GRAS
PfamPF035141.8E-12264IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
XIISCEGPAR VERHERVDQW RRRMSRAGFQ AGPIKMLGSA KQWLGQIEAC EGYTVVEEKG  60
CLVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947963.12e-34DELLA protein RGL1-like
TrEMBLA0A2P5B9Z63e-33A0A2P5B9Z6_PARAD; GRAS transcription factor
TrEMBLA0A2P5EIF53e-33A0A2P5EIF5_TREOI; GRAS transcription factor
STRINGXP_008239620.12e-33(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2545633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-14GRAS family protein