PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09978.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 90aa    MW: 10568.9 Da    PI: 10.4317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09978.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.1e-1828214100
                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                + l +pk+fa++h ++k++  tltl     r W vk+ +++ s    +++GWkeF +an Lk gD+++F+++++++ el+v+++rks
  PK09978.1   2 HKLNIPKHFARQHFKDKTQ--TLTLW-VGERCWHVKFLVCRES---SFSAGWKEFTRANSLKPGDVCIFEVINKNQSELKVTIIRKS 82 
                6799*********888666..56654.477*******665554...4899*********************9999999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.043182IPR003340B3 DNA binding domain
SMARTSM010191.4E-7182IPR003340B3 DNA binding domain
CDDcd100171.67E-16180No hitNo description
Gene3DG3DSA:2.40.330.104.2E-21283IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-15281IPR003340B3 DNA binding domain
SuperFamilySSF1019361.71E-18382IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
RHKLNIPKHF ARQHFKDKTQ TLTLWVGERC WHVKFLVCRE SSFSAGWKEF TRANSLKPGD  60
VCIFEVINKN QSELKVTIIR KSGENSSFEX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021816829.11e-15B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P5FXZ22e-23A0A2P5FXZ2_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1754236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-11related to vernalization1 1