PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10012.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 88aa    MW: 9660.52 Da    PI: 11.5453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10012.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-061436123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C +Cg+ F+++  L  H++ H
  PK10012.1 14 FVCDYCGREFNNSQALGGHQNAH 36
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-61340No hitNo description
PfamPF139121.1E-61438IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.031441IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-51438IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
XNNNSNNKRT SIIFVCDYCG REFNNSQALG GHQNAHKDKR SSLLSKRRRH EPTSPRPPPP  60
PRPPQLAVVG VPAVILGAPH HGGVMIKX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5CLS81e-14A0A2P5CLS8_PARAD; Yin/yang transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-09C2H2 family protein