PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK10500.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 477aa MW: 51821.1 Da PI: 6.1914

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10500.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.7e-40	128	188	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s PK10500.1 128 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 188 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	121	185	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	130	186	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	132	186	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	134	170	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MLESKDPAIT LFGMKIPLPC ENEAPAVSGD DFASQPSERE VDNDDDEEPE KDSSARSVSD 60 EDSEQEGDLC PQTDYSRNLD SIPGSSSVNP KTPSINEESS KSKLQMTDKE HGDATNTNNS 120 QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK ACQRYWTAGG TMRNVPVGAG 180 RRKNKNSASH YRHISISEAL HAARIDASSN GSHHTGLKTN GRVLSFGIDS PICDSMASVL 240 NLADKKVLSG NRNGYYKTEG KENNGDDCSS VSSVTISNTT DETGKNCPQE PQMHNINGQR 300 FPSVPCLPGV PWPYPWNSGV PPPAFCPPGF PMSFYPGAYW NCPVPGTWNV PWFPPQPSSP 360 NQKSPSPGSG SNSPTLGKHS RDGDTLNSDS CENEEPPKQK NGSVLVPKTL RIDDPSEAAK 420 SSIWATLGIK NDSISGGGMF KAFQSKTNDK KGIAETSPVL RANPAALSRS LNFHENS

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MLESKDPAIT LFGMKIPLPC ENEAPAVSGD DFASQPSERE VDNDDDEEPE KDSSARSVSD  60
EDSEQEGDLC PQTDYSRNLD SIPGSSSVNP KTPSINEESS KSKLQMTDKE HGDATNTNNS  120
QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK ACQRYWTAGG TMRNVPVGAG  180
RRKNKNSASH YRHISISEAL HAARIDASSN GSHHTGLKTN GRVLSFGIDS PICDSMASVL  240
NLADKKVLSG NRNGYYKTEG KENNGDDCSS VSSVTISNTT DETGKNCPQE PQMHNINGQR  300
FPSVPCLPGV PWPYPWNSGV PPPAFCPPGF PMSFYPGAYW NCPVPGTWNV PWFPPQPSSP  360
NQKSPSPGSG SNSPTLGKHS RDGDTLNSDS CENEEPPKQK NGSVLVPKTL RIDDPSEAAK  420
SSIWATLGIK NDSISGGGMF KAFQSKTNDK KGIAETSPVL RANPAALSRS LNFHENS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089911.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-125	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A2P5AJN0	0.0	A0A2P5AJN0_PARAD; Zinc finger, Dof-type
STRING	XP_010089911.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-116	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]