PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10594.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 21092.4 Da    PI: 10.8075
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10594.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.11e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien + rqvtfskRrng+lKKA+ELS LCdae a+iifss+gkly y+s
  PK10594.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSLLCDAELALIIFSSSGKLYQYAS 59
               79***********************************************86 PP
2K-box74.43.1e-2580172799
      K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 ++ +++ e +++e++ +k+ +e+L+ ++R+l GedL++L +keL+qLe+qL+ +++++R kK +++ e+i+ l+++ ++l een++L+kk++
  PK10594.1  80 HNQRSTTIEFWKTEIEEMKRSTETLEGNLRNLAGEDLSNLGMKELRQLERQLKIGVERVRCKKRRIVSEHINFLKRRRRALVEENTRLQKKVK 172
                44678889**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.408161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-31281IPR002100Transcription factor, MADS-box
CDDcd002658.24E-38270No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-2284171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.21587180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRGKVEVKR IENPTSRQVT FSKRRNGLLK KAFELSLLCD AELALIIFSS SGKLYQYASH  60
DMDRSIVRYR SEMGLLGSTH NQRSTTIEFW KTEIEEMKRS TETLEGNLRN LAGEDLSNLG  120
MKELRQLERQ LKIGVERVRC KKRRIVSEHI NFLKRRRRAL VEENTRLQKK VKLLDQQQEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A6e-26187183MEF2 CHIMERA
6bz1_B6e-26187183MEF2 CHIMERA
6bz1_C6e-26187183MEF2 CHIMERA
6bz1_D6e-26187183MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141157KRRIVSEHINFLKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017888.11e-101agamous-like MADS-box protein AGL1
TrEMBLA0A2P5FDA01e-110A0A2P5FDA0_TREOI; MADS-box transcription factor
STRINGVIT_17s0000g01230.t012e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-46AGAMOUS-like 16