PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK10734.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

WRKY

Protein Properties

Length: 284aa MW: 31205.4 Da PI: 8.8215

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10734.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	2e-33	133	191	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+++p++v++tYeg+H+h+ PK10734.1 133 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDNPTIVVTTYEGQHTHP 191 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-35	118	193	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-29	125	193	IPR003657	WRKY domain
PROSITE profile	PS50811	32.891	128	193	IPR003657	WRKY domain
SMART	SM00774	7.7E-40	133	192	IPR003657	WRKY domain
Pfam	PF03106	1.7E-27	134	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MLIFDDPINN NHLLGLSPPP PPSSPLPPPS STVPSPSPAS STVLPETSEV LNSTTPTTPN 60 SSTLSSSSNE EQKQKVVPNH QEEITEVEAE TEQDPEKSSH NNNNKQLKPK KKNQKRQREP 120 RFAFMTKSEV DHLDDGYRWR KYGQKAVKNS PYPRSYYRCT SAGCGVKKRV ERSSDNPTIV 180 VTTYEGQHTH PCPVTPRGSL GISPDSHSFF PSVSYGGAAA ASTVPMLPSH DHPHHRQYRP 240 YSSLLSSPYN NYSSSLNTIS SRSNNTKNDV VLGVMNSCSS TTTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-30	123	194	7	78	Probable WRKY transcription factor 4
2lex_A	6e-30	123	194	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372109.1	1e-76	PREDICTED: probable WRKY transcription factor 48 isoform X1
Refseq	XP_018506431.1	1e-76	PREDICTED: probable WRKY transcription factor 48 isoform X2
Swissprot	Q9FGZ4	1e-50	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	D9ZJG1	6e-72	D9ZJG1_MALDO; WRKY domain class transcription factor
STRING	XP_009372109.1	4e-76	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-49	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]