PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10836.7
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 596aa    MW: 65905.1 Da    PI: 5.6996
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10836.7genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30313372159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  PK10836.7 313 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 372
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-32298374IPR003657WRKY domain
SuperFamilySSF1182901.11E-27306374IPR003657WRKY domain
PROSITE profilePS5081129.184308374IPR003657WRKY domain
SMARTSM007743.2E-37313373IPR003657WRKY domain
PfamPF031065.0E-27314372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
XGKGKDKEIN IMEIDYNLSL KIDSREDDID DDHEGKAQEN GDDEELVEER EESKLHDNGE  60
DDEDDDDDDD EPITVQLVHS NSKEAAGEVE DEASVVESLQ QNNNMKPQEL SKLQMEMNRM  120
KEENIVLRKV VEKTMKDYYE LQIKFASIQQ NNPNNIKKQD TLAFLSLHHE TTQQKTSGTT  180
TTTVLLSNKR KSPSPAPAST VEEDSHELGL SLRLQSSTTS TTTQNKGEHN NKKDQEDHML  240
DHGGFTSYNN SNNNNTLLAM QNKLLQRTSS STDHNHHNNQ HQIAGITNHV TNGNPPNRKA  300
RVSVRARCEA ATMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAPGCPVRKQ VQRCLEDMSI  360
LITTYEGTHN HPLPVGATAM ASTTSAGHGA SSYMLLDSSS PNNLYSNHTT TSNYTHHMLI  420
NNPMMSHFNS SSSSSSSSTF RTLNPNINND PSKGIVLDLT NNITNTPQFP LPSLHHQPPN  480
NNNFSWNTIP NSTRPSSGAL NEGSWQGERG GGEEKTTSMA ENVTSAIASD PKFRVAVAAA  540
ITSLMNKDQQ SNHNNNTIVG SSSSTFEHNN NPNNNNNKDG DHSSGNGSST NNWVLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21300376176WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026192.11e-139probable WRKY transcription factor 9
TrEMBLA0A2P5BDA61e-162A0A2P5BDA6_TREOI; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-60WRKY DNA-binding protein 9