PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11171.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 81aa MW: 9222.47 Da PI: 10.4812

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11171.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.6e-19	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l++++ +G Wkt+a+ g++R++k+c+ rw++yl PK11171.1 24 RGAWTAEEDQKLAEVISHHGAQKWKTVAAIAGLNRCGKSCRMRWLNYL 71 89*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.18E-19	19	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.82	19	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-21	21	81	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	23	73	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-18	24	71	IPR001005	SANT/Myb domain
CDD	cd00167	5.93E-10	26	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MGSSSQSISK PIEEENNFNF KFNRGAWTAE EDQKLAEVIS HHGAQKWKTV AAIAGLNRCG 60 KSCRMRWLNY LRPNIKRGNI T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022998619.1	9e-33	transcription factor MYB114-like
Swissprot	P81394	9e-22	MYB15_ANTMA; Myb-related protein 315
TrEMBL	A0A2P5ETM6	2e-31	A0A2P5ETM6_TREOI; MYB transcription factor
STRING	XP_008391385.1	1e-31	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18570.1	1e-23	myb domain protein 51

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]