PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11281.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 636aa    MW: 72090.2 Da    PI: 4.3457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11281.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.5e-50101362128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                ppGfrF Ptdeelv +yLk+k+ gkkl+l +vi e+d+yk+eP++Lp +  +k+++++w+fFs+rd+k+++g+r+nr tk+gyWk tgk+++++s +++ 
  PK11281.2  10 PPGFRFYPTDEELVLYYLKRKICGKKLRL-NVIGETDVYKFEPEELPgMsILKTGDRQWFFFSPRDRKHPNGSRSNRGTKHGYWKVTGKNRSITS-TTRS 107
                9****************************.99***************6347788999**************************************.9999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfykg+apkge+tdWvmhey+l
  PK11281.2 108 VGVKKTLVFYKGHAPKGERTDWVMHEYTL 136
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-587159IPR003441NAC domain
PROSITE profilePS5100554.5079159IPR003441NAC domain
PfamPF023657.2E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MPFSDDQDCP PGFRFYPTDE ELVLYYLKRK ICGKKLRLNV IGETDVYKFE PEELPGMSIL  60
KTGDRQWFFF SPRDRKHPNG SRSNRGTKHG YWKVTGKNRS ITSTTRSVGV KKTLVFYKGH  120
APKGERTDWV MHEYTLDEEE LKRCQNLQDY YALYKVFKKS GLGPKNGEQY GAPFREEEWN  180
ADCPDFNRSA IVETPVERVD GALSNVESQE TIVDSQKSLS DEIEELLQQM TDEPLLDLPE  240
VKDYADNTPP QSQVLSNNDM QSNLVDSHSR EISFEEPVDS FHVSGVQNNV QANFEHTHSD  300
ISQLQFHVPS EVAFSPNIYE QEVYVLPVED FIEMDDLFGP EPTTTDAEKP LENFQFEEVD  360
GLSELDLFHD ATMFLNDIGA DDDQSRISHQ YVHSLEQNVV NSYQYRRNSE QVGEDEDVSQ  420
LLFEVADQNT NLYYLQGSDQ HTSLLHLEGT GQVNNHMYLE GTDPINNLLY QDIANQMNHQ  480
YQFQPDNQER SAFNSAEFDP GSHPDPSSVC DTSTFSLQPT QNQSGNDNNG NNSWFSSTLW  540
SFVESIPTTP ASAAENALVN RAFERMSSFS RLRINAAVNA TTVPAGSDSE TVKSSLRNRG  600
FIFFPILVVI IAILWVVLGT VKLWGSSSSN SSSIAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-491016518171NO APICAL MERISTEM PROTEIN
1ut4_B8e-491016518171NO APICAL MERISTEM PROTEIN
1ut7_A8e-491016518171NO APICAL MERISTEM PROTEIN
1ut7_B8e-491016518171NO APICAL MERISTEM PROTEIN
3swm_A7e-491016521174NAC domain-containing protein 19
3swm_B7e-491016521174NAC domain-containing protein 19
3swm_C7e-491016521174NAC domain-containing protein 19
3swm_D7e-491016521174NAC domain-containing protein 19
3swp_A7e-491016521174NAC domain-containing protein 19
3swp_B7e-491016521174NAC domain-containing protein 19
3swp_C7e-491016521174NAC domain-containing protein 19
3swp_D7e-491016521174NAC domain-containing protein 19
4dul_A8e-491016518171NAC domain-containing protein 19
4dul_B8e-491016518171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094888.10.0NAC domain-containing protein 17
TrEMBLA0A2P5FR660.0A0A2P5FR66_TREOI; NAC domain containing protein
STRINGXP_010094888.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-130NAC domain containing protein 17