PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11390.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 243aa    MW: 26839.4 Da    PI: 9.4438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11390.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000379101123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ C ++F ++  L  H++ H
  PK11390.1  79 FKCQFCRRVFANSQALGGHQNAH 101
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-476105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-676106No hitNo description
PROSITE profilePS5015711.55279106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XTQRPSYGGS TRIILIIIMS DHYYHHNNSS STSSSSSSTL KLFGFPITEN GEVLSCTSDN  60
KKEDYHTSSP SMWDDNRKFK CQFCRRVFAN SQALGGHQNA HKRERQRVSA QYQGRGPLLG  120
NAGPISPVLS PHSIRSLSSS ALYPPGRFTG FNNDNTSTAT IPTCCTTISR FDHHRSQPSQ  180
HAVAPPSYSH HHRLPDNTQY CLMSLRPREQ SFSTSSNTAS ATTSTPNPEV GHVDLHLKLS  240
LSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5CKU71e-58A0A2P5CKU7_PARAD; Yin/yang transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-13C2H2 family protein