PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11392.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HB-other
Protein Properties Length: 85aa    MW: 10136.6 Da    PI: 10.915
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11392.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98e-0919522154
               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
               k++yp+ e+++ L kk+g++ +q ++WF N R +
  PK11392.1 19 KHPYPTDEDKQMLLKKTGINMKQLTNWFTNARKR 52
               79*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.446156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-22162IPR009057Homeodomain-like
SuperFamilySSF466892.95E-13365IPR009057Homeodomain-like
SMARTSM003890.0022660IPR001356Homeobox domain
PfamPF059205.3E-181652IPR008422Homeobox KN domain
CDDcd000861.31E-71957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
PPHTVAILKG WMLSPEHVKH PYPTDEDKQM LLKKTGINMK QLTNWFTNAR KRIWKPMMRR  60
EHSRQLQTAM EYEKTRGRES FPGAX
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SJJ32e-17BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLA0A2D4BGU04e-49A0A2D4BGU0_PYTIN; Homebox domain-containing protein
TrEMBLA0A2D4BQH63e-48A0A2D4BQH6_PYTIN; Homebox domain-containing protein
STRINGEPrPI000000143473e-48(Pythium irregulare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.16e-20BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]