PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11564.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 158aa MW: 17556.2 Da PI: 8.2299

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11564.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	147.2	4.4e-46	25	124	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpee+r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e PK11564.1 25 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEEQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAIAQAE 124 7**********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.446	24	125	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-45	25	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
XYNIMKENSN IGSTGNGRKQ GGMSPCAACK LLRRRCAQDC VFAPYFPADE PHKFASVHKV 60 FGASNVNKML QELPEEQRSD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDALQTQLAI 120 AQAEVVHMRM TQFSPTSNHN HHHNNNNYNN NNNNNSNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	21	126	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	21	126	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424349.1	7e-83	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	1e-63	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0S3SK41	2e-81	A0A0S3SK41_PHAAN; Uncharacterized protein
STRING	XP_004294159.1	7e-82	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-65	LOB domain-containing protein 4