PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11664.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 105aa    MW: 12040.5 Da    PI: 9.7136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11664.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding643e-201157148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+++ ++v ++G   W++Ia+ ++ gR +kqc++rw+++l
        PK11664.2 11 KGPWTPEEDKKITELVSKYGATKWSLIAKSLP-GRIGKQCRERWHNHL 57
                     79******************************.*************97 PP
2Myb_DNA-binding491.4e-1563104144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++WT  E++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w
        PK11664.2  63 KDAWTIAEELSLMHAHQIHGNK-WAEIAKVLP-GRTDNAIKNHW 104
                      689*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.716661IPR017930Myb domain
SuperFamilySSF466891.95E-338104IPR009057Homeodomain-like
SMARTSM007178.5E-181059IPR001005SANT/Myb domain
PfamPF002491.5E-191157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-281265IPR009057Homeodomain-like
CDDcd001673.69E-151357No hitNo description
SMARTSM007173.3E-562105IPR001005SANT/Myb domain
PROSITE profilePS5129418.46762105IPR017930Myb domain
PfamPF002494.3E-1463104IPR001005SANT/Myb domain
CDDcd001677.44E-965104No hitNo description
Gene3DG3DSA:1.10.10.606.6E-1966104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MAEGPNPDLV KGPWTPEEDK KITELVSKYG ATKWSLIAKS LPGRIGKQCR ERWHNHLNPE  60
IRKDAWTIAE ELSLMHAHQI HGNKWAEIAK VLPGRTDNAI KNHWX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-4971043100B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429084.12e-58transcription factor MYB3R-5
RefseqXP_006429085.12e-58transcription factor MYB3R-5
RefseqXP_006480818.12e-58transcription factor MYB3R-5
RefseqXP_006480819.12e-58transcription factor MYB3R-5
RefseqXP_006480820.12e-58transcription factor MYB3R-5
RefseqXP_024037722.12e-58transcription factor MYB3R-5
SwissprotQ8H1P95e-55MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A2P5DS501e-59A0A2P5DS50_TREOI; GAMYB transcription factor
STRINGXP_006480818.18e-58(Citrus sinensis)
STRINGXP_006429084.18e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.12e-57myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]