PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11678.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 227aa    MW: 25005.5 Da    PI: 8.6767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11678.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-161667155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  PK11678.1 16 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 67
               89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-181677IPR016177DNA-binding domain
PfamPF008472.7E-121667IPR001471AP2/ERF domain
CDDcd000182.70E-251677No hitNo description
Gene3DG3DSA:3.30.730.105.2E-181776IPR001471AP2/ERF domain
PROSITE profilePS5103218.3341775IPR001471AP2/ERF domain
SMARTSM003801.2E-241781IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
XGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAATAYDM  60
AAIEYRGLNA VTNFDLSRYI KWLKPNTTST TTTTTTTNAT TTTHINNNNN INGNLINSSL  120
PNPNIINHEA TTLLTHDQNV LISQQQQDDH QLGLSSSFFH DFQNISCNVI GETLISSEQM  180
IQPRPAATAT SALGLLLQSS KFKEMMEMTS TGNDNCPPLS SSPPTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895068.12e-79AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2P5FND36e-89A0A2P5FND3_TREOI; AP2/ERF transcription factor (Fragment)
STRINGXP_010105409.15e-77(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1955722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-37ARIA-interacting double AP2 domain protein