PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11838.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 876aa MW: 101463 Da PI: 6.2001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11838.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.6	7.7e-27	61	147	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfYn+YA+ vGFsvrk+ ++sk +g++++r+f+Cskeg+r++++++ ++ r++r+etrtgC a++ ++++ dgk++vt++e +HnH+ PK11838.1 61 KFYNKYARLVGFSVRKDWVNRSKVHGQVVSRKFTCSKEGYRRKDRRD-VNVRKHRKETRTGCLAHMIITRQPDGKYRVTHFEAQHNHD 147 6*****************************************999.9************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-24	61	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.3E-26	271	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	551	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.7E-4	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MDIQLKTSND LDLNVEQDNR SQKVAHASCS THSTFSSKDE VGVDSILQIG TEFDSDEHAY 60 KFYNKYARLV GFSVRKDWVN RSKVHGQVVS RKFTCSKEGY RRKDRRDVNV RKHRKETRTG 120 CLAHMIITRQ PDGKYRVTHF EAQHNHDNVS PCNVQTFPLQ RELSVDQYTA ADFIEDFRPQ 180 SKEASVSMSR QFRVRDSLDD FSFNFDNYLR TERTRDMKEG DAARLMHYFQ RQHFENPSFL 240 YALQLDIDDK LSNIFWADDN MVSDYDHFGD VVCFDTVCRT KADHFPFVQF IGVNHHKQVV 300 IFAAALLYDD TVESYKWFLR TFLEIMSGKT PKTIHTDQDA AIIEAIQSVL PETNHCVCVW 360 QMYENAVKNL SRAVKDAQSF ANDLKSCIYD SKDEEDFVHT WETMLEKYSL QQNEWLKWMF 420 REQEKWAVVY CKNSFFIDTK GSHLGESLFN NLRDYLNSSL DVLQFFKHFE RVVDEQRYKE 480 TEASDEMDRC MPKLMGNVVI LKHASDVYTP RAFEVFQQGY EKCLNVVVNQ WSENGPSFEY 540 KTKKFGQSRE YNVTFNSEDD TVICNCRKFE CVGFLCSHAL KVLDHRNIKV VPSTYILKRW 600 TKDARLGSMK ECKELPPTHD NPKTIVANRY KDLCHKILTL SARASESEEA YVYAYRHLDE 660 VIEGVEKILR LKPEEAQGVT SSCMGANASE NEQSQVFIDG NAIDDKDNNK ANHGERAVLD 720 RDQLTILNEK SSATEGISNV EVLPQSTISC ISNSLAVYVS PSASTGNHIM QGLYDFEANQ 780 VVKSMYEQPN HVIDLQTNSN LYQPPNFYAN QQDSPSQSQL LQEPLIHNTY PESVSNTTQL 840 RQHMDLDIQH SHSASFLQFD QRYRAPDTPY LGHSHK

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MDIQLKTSND LDLNVEQDNR SQKVAHASCS THSTFSSKDE VGVDSILQIG TEFDSDEHAY  60
KFYNKYARLV GFSVRKDWVN RSKVHGQVVS RKFTCSKEGY RRKDRRDVNV RKHRKETRTG  120
CLAHMIITRQ PDGKYRVTHF EAQHNHDNVS PCNVQTFPLQ RELSVDQYTA ADFIEDFRPQ  180
SKEASVSMSR QFRVRDSLDD FSFNFDNYLR TERTRDMKEG DAARLMHYFQ RQHFENPSFL  240
YALQLDIDDK LSNIFWADDN MVSDYDHFGD VVCFDTVCRT KADHFPFVQF IGVNHHKQVV  300
IFAAALLYDD TVESYKWFLR TFLEIMSGKT PKTIHTDQDA AIIEAIQSVL PETNHCVCVW  360
QMYENAVKNL SRAVKDAQSF ANDLKSCIYD SKDEEDFVHT WETMLEKYSL QQNEWLKWMF  420
REQEKWAVVY CKNSFFIDTK GSHLGESLFN NLRDYLNSSL DVLQFFKHFE RVVDEQRYKE  480
TEASDEMDRC MPKLMGNVVI LKHASDVYTP RAFEVFQQGY EKCLNVVVNQ WSENGPSFEY  540
KTKKFGQSRE YNVTFNSEDD TVICNCRKFE CVGFLCSHAL KVLDHRNIKV VPSTYILKRW  600
TKDARLGSMK ECKELPPTHD NPKTIVANRY KDLCHKILTL SARASESEEA YVYAYRHLDE  660
VIEGVEKILR LKPEEAQGVT SSCMGANASE NEQSQVFIDG NAIDDKDNNK ANHGERAVLD  720
RDQLTILNEK SSATEGISNV EVLPQSTISC ISNSLAVYVS PSASTGNHIM QGLYDFEANQ  780
VVKSMYEQPN HVIDLQTNSN LYQPPNFYAN QQDSPSQSQL LQEPLIHNTY PESVSNTTQL  840
RQHMDLDIQH SHSASFLQFD QRYRAPDTPY LGHSHK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107406.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024028658.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	W9RWW4	0.0	W9RWW4_9ROSA; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_010107406.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1-related sequence 5