PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12109.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 326aa    MW: 36376.9 Da    PI: 4.9506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12109.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-1979127355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  PK12109.1  79 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 127
                9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77578135IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2278136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-3278136IPR001471AP2/ERF domain
SMARTSM003804.6E-3878141IPR001471AP2/ERF domain
PRINTSPR003678.8E-127990IPR001471AP2/ERF domain
PfamPF008476.9E-1279127IPR001471AP2/ERF domain
CDDcd000181.52E-3379136No hitNo description
PRINTSPR003678.8E-12101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCGGAIIAEF IHGNRGVRRV SSSDIWPNSS FDKLNTNNFF NSDFSQRGHD EPAPVKRSVP  60
STDGVQVEKP PKRPRKNLYR GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDR  120
EARKIRGKKA KVNFPNEEDS YSKIQPSRSN QTQTQLVNTT HNTPLYQQPR DTLPQSLEIE  180
FGYDLNKQIG AFPSNGFKTG ADPAATSGDE HSGSGSEGAY SSTGLMLGHN QNAAGDNGSI  240
TQTKVKEEEM PMKEVEVITI EEEEDNEVQK LSEELMAFEN YMKFYQIPYL DGQSVASNSV  300
QESDVGQLWS FDDNDDAPSS ETSPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2279135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21791371574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891869.11e-126ethylene-responsive transcription factor ERF071
TrEMBLA0A2P5AVG41e-162A0A2P5AVG4_PARAD; AP2/ERF transcription factor
STRINGXP_008235129.11e-111(Prunus mume)
STRINGEMJ016171e-111(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-31ethylene-responsive element binding protein