PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12240.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 130aa    MW: 15159.9 Da    PI: 10.7129
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12240.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.51.1e-4251302125
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....kaaksaa 95 
                agkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k+ai el ++  +s+++  +++++   +     +     k++++a 
  PK12240.1   5 AGKKDRHSKISTAQGLRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFNKSKTAITELKDSMITSNNNDdNDHDEDDDD-----DlvvvmKNNEAAG 99 
                89**************************************************************555553332223333333.....1344544444555 PP

        TCP  96 kskksqksaasalnlak.esrakarararer 125
                  +k+ k+ + +++l + esr  arararer
  PK12240.1 100 RDNKKMKNMNVVRKLVAkESRDMARARARER 130
                555555555555555545***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-376130IPR005333Transcription factor, TCP
PROSITE profilePS5136935.665765IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.421117130IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
XRRRAGKKDR HSKISTAQGL RDRRMRLSLQ IARKFFDLQD MLGFDKASKT IDWLFNKSKT  60
AITELKDSMI TSNNNDDNDH DEDDDDDLVV VMKNNEAAGR DNKKMKNMNV VRKLVAKESR  120
DMARARARER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634680.12e-37transcription factor TCP12-like
SwissprotA0AQW43e-32TCP12_ARATH; Transcription factor TCP12
TrEMBLA0A2C9ULA83e-36A0A2C9ULA8_MANES; Uncharacterized protein
STRINGcassava4.1_025363m7e-37(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-32TCP domain protein 12