PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12360.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 124aa    MW: 14902.1 Da    PI: 10.4576
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12360.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182881256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               r+R ++t+ q++ Le+ F ++++++ e++ +LA+klgL+ rqV +W+qNrRa++k
  PK12360.1 28 RTR-RLTQAQVRLLETSFTNDHKLQSERKLHLASKLGLSPRQVAIWYQNRRARHK 81
               444.89************************************************9 PP
2HD-ZIP_I/II102.63.2e-3328119293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  + rrl++ qv+lLE+sF++++kL++erK +la++Lgl+prqva+W+qnrRAR+kt+ +E dy++++ +++ +  e++rLe+ev  L++el++
    PK12360.1  28 RTRRLTQAQVRLLETSFTNDHKLQSERKLHLASKLGLSPRQVAIWYQNRRARHKTQTVEFDYRSIQLKLEDVLVEKRRLEREVGMLKHELNR 119
                  789************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.84E-181883IPR009057Homeodomain-like
PROSITE profilePS5007116.2932383IPR001356Homeobox domain
SMARTSM003893.2E-162687IPR001356Homeobox domain
CDDcd000861.29E-112783No hitNo description
PfamPF000466.4E-162881IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-183281IPR009057Homeodomain-like
PRINTSPR000311.1E-55463IPR000047Helix-turn-helix motif
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
PRINTSPR000311.1E-56379IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDFQCFDILI EETQQNQDLS KPLTGQRRTR RLTQAQVRLL ETSFTNDHKL QSERKLHLAS  60
KLGLSPRQVA IWYQNRRARH KTQTVEFDYR SIQLKLEDVL VEKRRLEREV GMLKHELNRA  120
QEML
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093963.11e-52homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2P5B6N38e-63A0A2P5B6N3_PARAD; Octamer-binding transcription factor
TrEMBLA0A2P5FJ645e-63A0A2P5FJ64_TREOI; Octamer-binding transcription factor
STRINGXP_010093963.16e-52(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.16e-23homeobox protein 21