PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12461.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 267aa    MW: 30170.9 Da    PI: 9.7988
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12461.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.1e-52141381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk++l++ ++++
  PK12461.1  14 LPPGFRFHPTDEELVVQYLKRKVFSYPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQILTSrGNHV 109
                79****************************.89***************54...46799**********************************99857788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+g+ p+g++tdW+mheyrl
  PK12461.1 110 VGMKKTLVFYRGKPPQGTRTDWIMHEYRL 138
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6010176IPR003441NAC domain
PROSITE profilePS5100557.94614176IPR003441NAC domain
PfamPF023654.0E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSYP LPASIIPEVD VCKSDPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGIDKQ ILTSRGNHVV GMKKTLVFYR  120
GKPPQGTRTD WIMHEYRLAN TTNNPQTKAT PEKSLHQSPV VVAPMESWVL CRIFLKKRGN  180
KNEDENLQTG VDHIVVRKVK STTKPVFYDF MTKEKKRADL NLAPTSSSSG SSGVTQVSSN  240
ESEEHEESSS CNSFPYFXKK AAAAGVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-521217715166NO APICAL MERISTEM PROTEIN
1ut4_B6e-521217715166NO APICAL MERISTEM PROTEIN
1ut7_A6e-521217715166NO APICAL MERISTEM PROTEIN
1ut7_B6e-521217715166NO APICAL MERISTEM PROTEIN
3swm_A6e-521217718169NAC domain-containing protein 19
3swm_B6e-521217718169NAC domain-containing protein 19
3swm_C6e-521217718169NAC domain-containing protein 19
3swm_D6e-521217718169NAC domain-containing protein 19
3swp_A6e-521217718169NAC domain-containing protein 19
3swp_B6e-521217718169NAC domain-containing protein 19
3swp_C6e-521217718169NAC domain-containing protein 19
3swp_D6e-521217718169NAC domain-containing protein 19
4dul_A6e-521217715166NAC domain-containing protein 19
4dul_B6e-521217715166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881782.11e-147NAC domain-containing protein 83-like
RefseqXP_015902286.11e-147NAC domain-containing protein 83-like
SwissprotQ9FY931e-107NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2P5BSW61e-154A0A2P5BSW6_PARAD; NAC domain containing protein
STRINGcassava4.1_014491m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-103NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]