PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK12462.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Nin-like

Protein Properties

Length: 646aa MW: 72130.2 Da PI: 6.8294

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK12462.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.7e-29	325	375	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ PK12462.1 325 TENISLSVLRQYFAGSLKDAAKCIGVCPTTLKRICRQHGITRWPSRKIKKV 375 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	8.2E-4	11	132	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.859	310	395	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-24	327	375	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.01E-21	531	621	No hit	No description
SMART	SM00666	4.9E-19	536	619	IPR000270	PB1 domain
PROSITE profile	PS51745	19.671	536	617	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-20	536	614	No hit	No description
Pfam	PF00564	1.6E-15	537	618	IPR000270	PB1 domain
CDD	cd06407	7.43E-32	537	618	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MPNFSPPNVC DELYQLVLNE IVEVLVSVCE IHRIPLAQTW ASCHQQGHSG ENYARCISSA 60 SLVSDLELLG FHQACSQQHH LFRNQGIVGA AFTGNKPCFT TDITALDKKE YLLSHHARMF 120 GLRAALAIPL RSIYSGISSF GFVLELFLPK DCQDQEEQKQ MSNSLSFLIQ QACECNSLRV 180 VVEKELKEDQ VMLQTRDQTT VSTPEEGLKL WSANTTTYPV GDQSSGKRSS CFDHVVVEAQ 240 QHGREVSASL DSLTEEPGKE FRVTPHGFNL NHGDLPKGKV PIDFGQLQQC SVSKESSNES 300 ADSYYFCGHS SSGTRKVGEK RTKSTENISL SVLRQYFAGS LKDAAKCIGV CPTTLKRICR 360 QHGITRWPSR KIKKVGHSLM KLQLMINSVE GADRAIQIGS FYSSIPQLNS PMIPENNDDS 420 SSSINPSEHR NHQQLNSQSN SQLESGIYKY NHGLAMKPLS SMSSEVSALQ LHSTTTFDGF 480 NGDSLITEDS SLVLNRSCSG HGELLASSRT ENQILHQTLP LLPEKNVGIT SRDKFAFRVK 540 ANYGDKKIRF SLIPNCSYKE LQLEIMRRFS LDDITMIDIK YLDDDRDWIL LTCNADLQEC 600 FEIHSQSQNW KMRLCLQQAS SNQKIEPSPF ESSSSSHVSS TNYKSV

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MPNFSPPNVC DELYQLVLNE IVEVLVSVCE IHRIPLAQTW ASCHQQGHSG ENYARCISSA  60
SLVSDLELLG FHQACSQQHH LFRNQGIVGA AFTGNKPCFT TDITALDKKE YLLSHHARMF  120
GLRAALAIPL RSIYSGISSF GFVLELFLPK DCQDQEEQKQ MSNSLSFLIQ QACECNSLRV  180
VVEKELKEDQ VMLQTRDQTT VSTPEEGLKL WSANTTTYPV GDQSSGKRSS CFDHVVVEAQ  240
QHGREVSASL DSLTEEPGKE FRVTPHGFNL NHGDLPKGKV PIDFGQLQQC SVSKESSNES  300
ADSYYFCGHS SSGTRKVGEK RTKSTENISL SVLRQYFAGS LKDAAKCIGV CPTTLKRICR  360
QHGITRWPSR KIKKVGHSLM KLQLMINSVE GADRAIQIGS FYSSIPQLNS PMIPENNDDS  420
SSSINPSEHR NHQQLNSQSN SQLESGIYKY NHGLAMKPLS SMSSEVSALQ LHSTTTFDGF  480
NGDSLITEDS SLVLNRSCSG HGELLASSRT ENQILHQTLP LLPEKNVGIT SRDKFAFRVK  540
ANYGDKKIRF SLIPNCSYKE LQLEIMRRFS LDDITMIDIK YLDDDRDWIL LTCNADLQEC  600
FEIHSQSQNW KMRLCLQQAS SNQKIEPSPF ESSSSSHVSS TNYKSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111706.2	0.0	LOW QUALITY PROTEIN: protein NLP2
TrEMBL	A0A221I0U9	0.0	A0A221I0U9_PARRI; Truncated nodule inception protein
TrEMBL	A0A221I0W5	0.0	A0A221I0W5_9ROSA; Truncated nodule inception protein
STRING	XP_008235979.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	1e-117	Nin-like family protein