PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12544.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 436aa    MW: 49943.1 Da    PI: 5.2128
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12544.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.8e-36141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye++e++ +++++sws+ng sfvv++++ef+k++Lp yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++ll++i+
     PK12544.1  14 FLTKTYELVEEPMTDNIVSWSQNGCSFVVWNPTEFSKDLLPMYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     PK12544.1 102 RRK 104
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.49E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDGSQGSSTA PAPFLTKTYE LVEEPMTDNI VSWSQNGCSF VVWNPTEFSK DLLPMYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGQRHLLKNI HRRKPIHSHS IHNQVNSVPL  120
TDTERYEYEK EIKRLKNEKN SLQLTLQMHE REKQEFELQK QSLNNRFQTM EQRQMQLMSS  180
LAELMQKPSF ASILMQHSDN HNKKRRLLNS SSNHSDESNI DENSNWNQED TKLNHIEKLE  240
GSIEFWESFL YRIGEEFNSV AGVFSQASPM IDTEIVQHVE LNFCRSCSPL SHPSSPNSFD  300
NNNNVHSSPE APGSPINHLD IANIFSICLD AVDTTPKSSK LDMNSSPACG AEVEGSKEEE  360
DVGVTEVSPA KVNDFFWEQC LTETPPASSD LHEIQPERVQ IDESSNGSKA ATHKTNWWNM  420
NSNNNTTQRG HLTSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26310319129Heat shock factor protein 1
5d5v_B1e-26310319129Heat shock factor protein 1
5d5v_D1e-26310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109197.11e-170heat stress transcription factor A-4c
TrEMBLA0A2P5FFD20.0A0A2P5FFD2_TREOI; Heat shock transcription factor
STRINGXP_010109197.11e-169(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-73HSF family protein