PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12746.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 755aa    MW: 86095.6 Da    PI: 6.5906
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12746.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.84.7e-2059153190
       FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 
                +fY++++k++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+       +w+vt ++++HnHel 
  PK12746.1  59 EFYCSFGKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRAGYPQMKPSEDGKLQRNRKSSRCGCQAYMRIVKRAefdhVPEWRVTGFSNNHNHELL 153
                6***************999887455667********************9*******************988876655578*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1759153IPR004330FAR1 DNA binding domain
PfamPF105517.0E-22276367IPR018289MULE transposase domain
PROSITE profilePS509669.619540588IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-6562586IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MSEGTSLVIE SSENCTDLSQ DDVSTTGETS DDTILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFGKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRAGYP QMKPSEDGKL QRNRKSSRCG  120
CQAYMRIVKR AEFDHVPEWR VTGFSNNHNH ELLKSNEVCV IPTYCIISPD DKSRICLFAK  180
AGMSVRQMLR LMELEKGVKL GCLPFTEIDV RNLLQSFRNV DRDNDAIDLI SMCKKLKDEN  240
PNFKYDFKID GHNRLDHIAW SYASSVQSYE AFGDAVVFDT THRLDAYDML LGIWLGIDNY  300
GTTCFFGCVL LRDENMQSFS WALKTFLDFM KGKAPQTLLT DHNTWLKESI VNEMPQTKHA  360
FCIWHIISKF SNWFSVLLGS RYDEWKIEFH HLYNLDGADD FEEGWRDMVN KYGLQTNRHI  420
MSLYALRTFW ALAFLRHFFF AGMMNTSQAE SINAFIQRFL SAQSQMDRFV HNLADVIEFK  480
DRAGAKQKMQ QKMQKVCLKT GSPIEAHAAS VLTPYAFNKL QEELVLAPQY ASVPVDDGCF  540
QVRHHTQMDG GCKVIWLPCQ ELISCSCHQF EFSGILCKHV LRVLSTNNCF HIPDEYLPTR  600
WRDASSSTTY TFQNTSMREH SGKVQLLESM ASALIAESVE TDERLDSACE QIAIVLSRIK  660
DLPRPMHDTN DDYTCPSDAL ILQEVEDADG IVRFTVGNPH ESISTGKLKE RRPRDGVDIG  720
RKRRSGSCCG EFGHDASECQ LMGGDHLNGD ALGYL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019988.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_024019989.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2N9EMT40.0A0A2N9EMT4_FAGSY; Uncharacterized protein
STRINGEOY066540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]