PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK12935.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

WRKY

Protein Properties

Length: 124aa MW: 14050.8 Da PI: 11.1871

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK12935.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.1	1.3e-31	28	86	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gC ++k+ver+++dp+ ++itY+g+H+h+ PK12935.1 28 TDVWAWRKYGQKPIKGSPFPRNYYRCSSSkGCAARKQVERNNNDPESFIITYTGHHTHP 86 69***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-31	13	88	IPR003657	WRKY domain
PROSITE profile	PS50811	32.73	22	88	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-27	22	88	IPR003657	WRKY domain
SMART	SM00774	2.1E-36	27	87	IPR003657	WRKY domain
Pfam	PF03106	9.3E-27	29	86	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MSSMPRSRKR KNQQKKTVCH VTADNLSTDV WAWRKYGQKP IKGSPFPRNY YRCSSSKGCA 60 ARKQVERNNN DPESFIITYT GHHTHPRPTH RNSLAGSTRN KLSPPPNVTP IITKNSDQSP 120 STTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-20	29	89	18	80	Disease resistance protein RRS1
5w3x_D	4e-20	29	89	18	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022973049.1	2e-59	probable WRKY transcription factor 27 isoform X1
Refseq	XP_023551273.1	2e-59	probable WRKY transcription factor 27 isoform X1
Swissprot	Q9FLX8	2e-57	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A2P5FGQ4	4e-59	A0A2P5FGQ4_TREOI; WRKY domain containing protein
STRING	XP_010060258.1	7e-57	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6794	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	4e-50	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]