PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13251.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 249aa    MW: 28640.2 Da    PI: 9.9007
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13251.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.52.3e-31161441127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknr.atksgyWkatgk.dkevlsk.. 95 
                lp G+rF Ptdeel+ +yLk+kv++ +l++ +vi+e+d+++++Pw Lp  v   +++ yfF++ +k    ++k  +r     g+Wk   + dk ++++  
  PK13251.1  16 LPIGYRFCPTDEELLLHYLKRKVHALPLPA-SVISEFDVFQTDPWALPGDV---KEKRYFFCNYRKMDIlNNKMCKRvNSGCGFWKPVVNkDKLIVASef 111
                699***************************.99***************554...457899999988877356666675566899**77651566666589 PP

        NAM  96 kgelvglkktLvfykg.rapkgektdWvmheyr 127
                +++++g++ktLvf  g r  + +kt+W+mhey 
  PK13251.1 112 NNQAIGVRKTLVFCGGkRLLQDSKTRWFMHEYY 144
                9999**********774667889*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3713175IPR003441NAC domain
PROSITE profilePS5100538.39316175IPR003441NAC domain
PfamPF023652.4E-2017143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKQNFGTNN NGGLKLPIGY RFCPTDEELL LHYLKRKVHA LPLPASVISE FDVFQTDPWA  60
LPGDVKEKRY FFCNYRKMDI LNNKMCKRVN SGCGFWKPVV NKDKLIVASE FNNQAIGVRK  120
TLVFCGGKRL LQDSKTRWFM HEYYFVRSQT IPNSNSLHQM SQLQMNWVVC GVFQKKRKLN  180
SNKNNINNNK QKKRNQLILS SDEGSPRPSF SCSSGVTDQE DDQEESSTAH IISYNNNTNN  240
NGSKSSFNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-251417615166NO APICAL MERISTEM PROTEIN
1ut4_B4e-251417615166NO APICAL MERISTEM PROTEIN
1ut7_A4e-251417615166NO APICAL MERISTEM PROTEIN
1ut7_B4e-251417615166NO APICAL MERISTEM PROTEIN
4dul_A4e-251417615166NAC domain-containing protein 19
4dul_B4e-251417615166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110935.12e-72NAC domain-containing protein 83
TrEMBLA0A2P5FCC24e-91A0A2P5FCC2_TREOI; NAC domain containing protein
STRINGXP_010110935.19e-72(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-38NAC domain containing protein 83