PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13281.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 140aa    MW: 16767.2 Da    PI: 10.7668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13281.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++++ ++G g+W++ a++ g++Rt+k+c++rw++yl
        PK13281.1 18 RGPWTLEEDTLLIHYISLHGEGHWNLLAKRAGLKRTGKSCRLRWLNYL 65
                     89*********************************************7 PP
2Myb_DNA-binding53.65e-1771114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        PK13281.1  71 RGNLTPQEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 114
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3481365IPR017930Myb domain
SuperFamilySSF466891.95E-3116112IPR009057Homeodomain-like
SMARTSM007178.0E-161767IPR001005SANT/Myb domain
PfamPF002491.3E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-241972IPR009057Homeodomain-like
CDDcd001671.47E-102065No hitNo description
PROSITE profilePS5129425.44566120IPR017930Myb domain
SMARTSM007175.7E-1570118IPR001005SANT/Myb domain
PfamPF002495.3E-1671114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2473119IPR009057Homeodomain-like
CDDcd001675.19E-1075114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MHTITTKFNN EEEIELRRGP WTLEEDTLLI HYISLHGEGH WNLLAKRAGL KRTGKSCRLR  60
WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSRIAQHL PGRTDNEIKN YWRTRVQKQA  120
RQLNIESNSK KFIEAVRGFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26151204108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099251.12e-87transcription factor MYB62
SwissprotQ9C9G71e-76MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2P5F0S42e-88A0A2P5F0S4_TREOI; MYB transcription factor
TrEMBLJ9JF552e-88J9JF55_HUMLU; Myb transcription factor
STRINGXP_010099251.17e-87(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.13e-80myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]