PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK13380.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 252aa MW: 28549.7 Da PI: 6.9646

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK13380.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90	3.2e-28	88	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p PK13380.1 88 FYNAYATRIGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVTSGKWVVTKFVKEHTHPLTP 175 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-25	88	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
XEFGVDGDVN GEILRNSVEV DNSRGGDENE TGGSSVEGAF QHDHDEKMNQ DSPDGDMIPV 60 GVPTTSLVPA DEPFVGQEFD SEAAAHAFYN AYATRIGFII RVSKLSRSRR DGTAIGRALV 120 CNKEGYRMPD KREKIVRQRA ETRVGCRAMI LVRKVTSGKW VVTKFVKEHT HPLTPGKGRR 180 DCIYDQYPNE HDKIRELSQQ LAIEKKRAAT YKRHLELIFE HIEEHNESLS KKIHHIVESV 240 KEVETKEQQG HR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097543.2	1e-165	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P5CSI9	1e-176	A0A2P5CSI9_PARAD; FHY3/FAR1 family
STRING	XP_010097543.1	1e-165	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-88	FAR1 family protein