PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK13485.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 507aa MW: 55168.7 Da PI: 5.383

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK13485.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	141	201	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s PK13485.1 141 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNSA 201 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	138	198	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-32	143	199	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	145	199	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	147	183	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MSEPKDPAIK LFGKTIPVAE VPVTSGGSQG PSVSASATSM DDNMDQEPKP NSSSSEVITS 60 KDEDDRDTEK ATTNDDPTET KEEDGNQPMS PEEPRNSGAT SGSSENPTTP VDKESVTPKA 120 SKTEEEQSEG NNSQEKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKKCQRYWT 180 AGGTMRNVPV GAGRRKNKNS ASHYRHITVS EALQNGRTDV SSGIHSPHPS MKSNGTVLTF 240 GSDAPLCESM ASVLNLADKN LRNCTQNGFL KPEEVRTPVP FQSVEHGDNN VDGSSITTSN 300 SKDEACNNVS QEQVIQNPQG VPPQMPCFPG PPWPYPWNAA QWNPSVPMPA FCPPGYPMPF 360 YPAPAYWGCS VPGTWNIPWL PMPTSQNPAA PSSGPNSPNS PTLGKHSRDE NTVKSNSSEE 420 EQPKESNSER CLWIPKTLRI DDPGEAARSS IWATLGIKND KADSISGGGL FKAFQPKNDE 480 KNHRAENSVL QANPAALSRS LSFQERS

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MSEPKDPAIK LFGKTIPVAE VPVTSGGSQG PSVSASATSM DDNMDQEPKP NSSSSEVITS  60
KDEDDRDTEK ATTNDDPTET KEEDGNQPMS PEEPRNSGAT SGSSENPTTP VDKESVTPKA  120
SKTEEEQSEG NNSQEKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKKCQRYWT  180
AGGTMRNVPV GAGRRKNKNS ASHYRHITVS EALQNGRTDV SSGIHSPHPS MKSNGTVLTF  240
GSDAPLCESM ASVLNLADKN LRNCTQNGFL KPEEVRTPVP FQSVEHGDNN VDGSSITTSN  300
SKDEACNNVS QEQVIQNPQG VPPQMPCFPG PPWPYPWNAA QWNPSVPMPA FCPPGYPMPF  360
YPAPAYWGCS VPGTWNIPWL PMPTSQNPAA PSSGPNSPNS PTLGKHSRDE NTVKSNSSEE  420
EQPKESNSER CLWIPKTLRI DDPGEAARSS IWATLGIKND KADSISGGGL FKAFQPKNDE  480
KNHRAENSVL QANPAALSRS LSFQERS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088142.1	0.0	cyclic dof factor 2
TrEMBL	A0A2P5FF12	0.0	A0A2P5FF12_TREOI; Zinc finger, Dof-type
STRING	XP_010088142.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-97	cycling DOF factor 2