PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13567.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 240aa    MW: 24879.7 Da    PI: 10.5956
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13567.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.78.6e-381493383
        TCP  3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83
               +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++    s s+ +s
  PK13567.1 14 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SVSVRGS 93
               79******************************************************************87732..2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2091973IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-321994IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
XPQQLTATNG ALVVKKPPSK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE  60
WLLRQAEPSI IAATGTGTTP ASFSTVSVSV RGSAGNGLGG VSASLSTSSG NSGSLEHKPL  120
LGPTPFILGK RVRPDDGVGK DNHDGHDGVS VVGAMGSMVG SATTAPGGFW APHFGQVWSF  180
AAAPPDMQPS VSQQPLFVQQ QTIGEASAAR VGNYLPGHLN LLASLSGGQG NSGRREDDPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096790.11e-115transcription factor TCP7
SwissprotQ9FMX21e-91TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2P5F0A81e-129A0A2P5F0A8_TREOI; TCP transcription factor
STRINGXP_010096790.11e-114(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-77TCP family protein