PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13647.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 135aa    MW: 15512.7 Da    PI: 8.2088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13647.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.6e-1870104135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  PK13647.1  70 CTHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRL 104
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-1564118IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.14767100IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-1568128No hitNo description
Gene3DG3DSA:3.30.50.103.0E-1468102IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.97E-1369116No hitNo description
PROSITE patternPS0034407095IPR000679Zinc finger, GATA-type
PfamPF003204.4E-1670104IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MPKNTTTNFE YPPLLKQTYW LCDSELIVPK KDVDKNEEER EKENGDLVKE IDEDEEQLGF  60
MAHGLVARRC THCLSQKTPQ WRAGPLGPKT LCNACGVRYK SGRLLPEYRP AKSPTFVSYL  120
HSNSHKKVME MRNGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019432694.18e-55PREDICTED: GATA transcription factor 5-like isoform X1
RefseqXP_019432695.18e-55PREDICTED: GATA transcription factor 5-like isoform X2
SwissprotO826322e-35GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2P5DHI04e-56A0A2P5DHI0_TREOI; GATA transcription factor
STRINGXP_007161927.17e-54(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-38GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]