PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK13860.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 366aa MW: 41116.7 Da PI: 9.2097

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK13860.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.7e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL kkv ++++ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lv PK13860.1 16 LPPGFRFHPTDEELISHYLYKKVVDTSFLC-RAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSLV 113 79***********************999.88***********888999************************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfykgrapkgek++Wvmheyrle PK13860.1 114 GMKKTLVFYKGRAPKGEKSNWVMHEYRLE 142 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.747	16	166	IPR003441	NAC domain
Pfam	PF02365	2.8E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MANVIGHVKE GEQLDLPPGF RFHPTDEELI SHYLYKKVVD TSFLCRAIGE VDLNKSEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSGG KKIPINGLSR 180 LSPLGNEMGP FGLPPLMDSS SPYCNKSKPV FQSMNVPCFS SPINNSNVIR NQDETMVDSL 240 NINSLYGVVS NPLSTNAVLP RTPLPNSLYS DQNAAVSSHM QFPNSYIVPH NNNNGEDQSI 300 LRALVENNGS NLRQIFKTER ETAVNSEVNT SAMADLEMGR RPFGNQVIPT HAATASAGSV 360 DMENFW

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MANVIGHVKE GEQLDLPPGF RFHPTDEELI SHYLYKKVVD TSFLCRAIGE VDLNKSEPWD  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYKGRAPKGE KSNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSGG KKIPINGLSR  180
LSPLGNEMGP FGLPPLMDSS SPYCNKSKPV FQSMNVPCFS SPINNSNVIR NQDETMVDSL  240
NINSLYGVVS NPLSTNAVLP RTPLPNSLYS DQNAAVSSHM QFPNSYIVPH NNNNGEDQSI  300
LRALVENNGS NLRQIFKTER ETAVNSEVNT SAMADLEMGR RPFGNQVIPT HAATASAGSV  360
DMENFW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	2e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093594.1	1e-180	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-143	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2P5F6Z0	0.0	A0A2P5F6Z0_TREOI; NAC domain containing protein
STRING	XP_010093594.1	1e-180	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-146	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]