PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13905.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 868aa    MW: 101994 Da    PI: 6.7401
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13905.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06232251625
                -SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                C+f+++tG C++G rC++ H
  PK13905.1 232 CPFHLKTGACRFGQRCSRVH 251
                ******************99 PP
2zf-CCCH25.91.7e-08361388126
                --S---SGGGGTS..--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                +k ++C  ++++   tC++G  C+F+H+
  PK13905.1 361 WKVAICGEYMKSRfkTCSRGTACNFIHC 388
                899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.92226254IPR000571Zinc finger, CCCH-type
SMARTSM003562.9227253IPR000571Zinc finger, CCCH-type
PRINTSPR018482.4E-37232251IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.14E-15245362IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.4E-37251271IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3304.5E-26257356IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.104258358IPR000504RNA recognition motif domain
CDDcd125402.41E-46259357No hitNo description
SMARTSM003614.3E-5282354IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018482.4E-37287302IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.4E-37315337IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.4E-37342366IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.878360390IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041360389IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6361388IPR000571Zinc finger, CCCH-type
PRINTSPR018482.4E-37380392IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
AIAKAEGLEE EEREMQPEFE GLALENGMNR KEKRKALKKM KRKQIRKEVA MKEREEVEAW  60
LNDPEEQKRI SLMEHEEAER SARERKEFEE REKAWLEAME MQRKKKMEEE EEEEEEQRRK  120
ALDEESRKQQ VETANEVDES DEWEYEEGPA EIIWQGNEII FKKKRVRVSK KNSHLDDSSI  180
KEDVDRPTSN PLAPEFETFS EYRNSLMSGQ QLIESVAEQV PNFGTELDKA HCPFHLKTGA  240
CRFGQRCSRV HFYPDKSCTL LIKNMYSGPG LAWEQDEGLE YTDEEVERCY EEFYEDVHTE  300
FLKFGEIVNF KVCRNGSSHL RGNVYVHFKS LDSAVLAHHF VNGRYFAGKQ VGCEFVNLTR  360
WKVAICGEYM KSRFKTCSRG TACNFIHCFR NPGGDYEWAD SDKPPPRYWV QKMVALFGHS  420
NESVHEGLRE QGNLDEPNSA GKRSRADANW YCSRRSGSRE TSYRDDHGHS GSSRRKENLD  480
FVRRTEDQFR CTSDGIRSLD DDIHEDDKHQ KKRKKRHTDS DAKIFDDDRK KSGDESHDYM  540
RETSRWKSKE YKNNTHEYGS DGERLTREGD RKKHHERARK SSNYHKRVRK LDDYEDYRSR  600
EIDFNRRGKS GNKEISHDSR KSSSRRRRYP GNHLDRNNRS HDTGRELSDK GSYGDELLGE  660
DVARHFCQIR TQTNEVSNVS DDQGEPENSL ENRGDSCIDI VKADSGNSKD KSYDSGTSSQ  720
YDERYRSHDL WESEQCSDKK SHKSRMVTSF SSSSGQYNGK QKSNDHDLEL HHYQDHEEHP  780
SESEEVISEH WKSKSKSGSD HYEQCSAESG RESRSRRSRK SSHRRHSKSN RLEKRDFPEG  840
DKKSREDLRK NGSHHGYDYH TPDGERKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A1e-302233879167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1506512DKHQKKR
2510514KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025810.10.0zinc finger CCCH domain-containing protein 5
TrEMBLA0A2P5CWP70.0A0A2P5CWP7_TREOI; U2 auxiliary factor small subunit
STRINGXP_008218649.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-144C3H family protein