PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK13916.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 187aa MW: 21631.2 Da PI: 4.5263

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK13916.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.4	1.9e-16	103	175	14	90
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + + +p+ f+++h ++k+e ++++d++ + We l r +s++++l +GW++F+++ngL+ gD ++F++++++ PK13916.1 103 DEVQIPNVFVRKHFEEKTE--AVKIQDKEKKFWEADL--RWSSDQVILCDGWSKFARQNGLRPGDPCLFQMVSNEMD 175 5678*******866555..6***********..999999***********************9886433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	6.936	1	37	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.083	90	187	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.28E-17	92	173	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-18	92	183	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.8E-6	94	184	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-14	103	175	IPR003340	B3 DNA binding domain
CDD	cd10017	3.80E-12	107	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
XEFIENNDLK IEDVLIFELI EKTEKIIVFN IIIHRVTQQS QQLQCHQEVE GNNMISETNS 60 KDDTSCHASK DKPSSSKDGQ FFGEGTEQCC YPSFEVKLGE SIDEVQIPNV FVRKHFEEKT 120 EAVKIQDKEK KFWEADLRWS SDQVILCDGW SKFARQNGLR PGDPCLFQMV SNEMDPIVLK 180 VTVIFYV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	2e-09	B3 family protein