PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK13964.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 356aa MW: 40182.6 Da PI: 8.5543

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK13964.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	3.9e-53	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+++yL+ kv + +l i evd++++ePw+Lp +k +ekew+fFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l PK13964.1 10 LPPGFRFHPTDEELITFYLASKVFNGTLCG-VDIVEVDLNRCEPWELPDVAKMGEKEWFFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsNGSL 108 79***********************777.34***********8888899**********************************9978899 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrap+gekt+Wvmheyrl PK13964.1 109 LGMKKTLVFYKGRAPRGEKTKWVMHEYRL 137 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-64	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	59.945	10	159	IPR003441	NAC domain
Pfam	PF02365	2.4E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
XGEHINEQGL PPGFRFHPTD EELITFYLAS KVFNGTLCGV DIVEVDLNRC EPWELPDVAK 60 MGEKEWFFFS LRDRKYPTGL RTNRATGAGY WKATGKDREV YSASNGSLLG MKKTLVFYKG 120 RAPRGEKTKW VMHEYRLDGN FSSRHTRKEE WVICRIYHKT GEKKNPIFHG RQSCLPALLE 180 AQPTPTPMKA SSSLLEEYEF TTQNPMRTIP SQNLFLNSGS GNDLKSLITN NPVVSQSHLF 240 PIHGLSTSST IATTNKNPSI STSSSSSVLF KSLLSHQNST WNNKQQCQEQ PLTVPKQCKT 300 ETNFSHFQAA TQPLLSSSTH PDKDNYNNFL PNNYNNNNTM LFESDDYGVL GLLSSX

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

XGEHINEQGL PPGFRFHPTD EELITFYLAS KVFNGTLCGV DIVEVDLNRC EPWELPDVAK  60
MGEKEWFFFS LRDRKYPTGL RTNRATGAGY WKATGKDREV YSASNGSLLG MKKTLVFYKG  120
RAPRGEKTKW VMHEYRLDGN FSSRHTRKEE WVICRIYHKT GEKKNPIFHG RQSCLPALLE  180
AQPTPTPMKA SSSLLEEYEF TTQNPMRTIP SQNLFLNSGS GNDLKSLITN NPVVSQSHLF  240
PIHGLSTSST IATTNKNPSI STSSSSSVLF KSLLSHQNST WNNKQQCQEQ PLTVPKQCKT  300
ETNFSHFQAA TQPLLSSSTH PDKDNYNNFL PNNYNNNNTM LFESDDYGVL GLLSSX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-52	7	162	12	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023877866.1	1e-145	protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-98	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A2P5A974	1e-175	A0A2P5A974_PARAD; NAC domain containing protein
STRING	EOY15912	1e-136	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7888	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-100	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]