PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14243.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 257aa    MW: 29068.1 Da    PI: 8.6726
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14243.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.2e-41120196278
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                C v+gC+adls+++eyh+rh+vCe+hsk+p v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  PK14243.1 120 CLVDGCRADLSNCREYHKRHRVCEHHSKTPIVVVKGEEKRFCQQCSRFHSLGEFDEIKRSCRKRLDGHNRRRRKSQP 196
                **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-32114181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.214117194IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.2E-37119199IPR004333Transcription factor, SBP-box
PfamPF031104.5E-30120193IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
XKGGDRIEEI YGALMDWDFR EFGWESTHEL DPKEDDDDDL VFDFISSGRT TTTTSSSSTT  60
APSSESLKLG SFTTMNDPTE QNSLKRPNQV LGDSNLVSSP SGSSSKRVNG IVGGSQKLSC  120
LVDGCRADLS NCREYHKRHR VCEHHSKTPI VVVKGEEKRF CQQCSRFHSL GEFDEIKRSC  180
RKRLDGHNRR RRKSQPEPLY FSSKGFLSGY KGPRILHFGN PHIYAANGMK SLWPLETKNG  240
GTESWIYSHP PHHKRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-26110193184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112387.21e-94squamosa promoter-binding-like protein 9
TrEMBLA0A2P5FC861e-127A0A2P5FC86_TREOI; SBP-box transcription factor
STRINGXP_010112387.18e-90(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-45SBP family protein