PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14410.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 553aa    MW: 60889 Da    PI: 7.3074
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14410.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15171230155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  PK14410.1 171 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 230
                57*******************666664477446*************************98 PP
2AP247.15.9e-15273324155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PK14410.1 273 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 324
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-21171240No hitNo description
SuperFamilySSF541715.75E-17171240IPR016177DNA-binding domain
PfamPF008473.2E-12171230IPR001471AP2/ERF domain
PROSITE profilePS5103218.808172238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-15172239IPR001471AP2/ERF domain
SMARTSM003801.0E-28172244IPR001471AP2/ERF domain
PRINTSPR003672.4E-6173184IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18273334IPR016177DNA-binding domain
PfamPF008477.3E-10273324IPR001471AP2/ERF domain
CDDcd000182.39E-24273334No hitNo description
PROSITE profilePS5103219.045274332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18274333IPR001471AP2/ERF domain
SMARTSM003801.5E-33274338IPR001471AP2/ERF domain
PRINTSPR003672.4E-6314334IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDHSSSSSST PHHDDHHHQN WLAFSLSNHN PLSLFQTSFT TPNNLEDHHH HQDASSTDLA  60
MFTGAAPKLE NFLGGGPTTA SSPNSNNNNQ FNGVDQTAVT EADELYESEL KTIAASFLHG  120
FNSHINNNNN NNIMSIITND SNLSCQLEAP PSAVAPVSSK KTVDTFGQRT SIYRGVTRHR  180
WTGRYEAHLW DNSCRREGQS RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFAVS  240
NYEKELEDMT NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  300
YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS IANSNLPVGG MSNNTKLSKT  360
SPERAIDNLS SPASSLVAFS SSATNNNNNT TPQQQQQQQQ QISSNLSFTL PIKQDLTTTT  420
TSSTDYWSNI FGFQNPNPSS TTSTTPSLLL GHNSHNLSAT TTNATTTTTT TSNGGYYGNF  480
IESISNNNNN NNNTNLGYGS GLSSWISNSN HNINGGSSNS SNVHNHLHHH HHHHEVVHAK  540
QPSLFQTPIF GME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411230.11e-175AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-149AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2P5DRK00.0A0A2P5DRK0_PARAD; AP2/ERF transcription factor
STRINGEOY318701e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-136AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]