PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14629.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 378aa MW: 42155.2 Da PI: 8.1257

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14629.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl PK14629.1 27 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 81 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	24	84	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-32	24	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.77E-16	26	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	27	82	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	29	79	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-22	123	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MNAHAHSHER PMCVQGDSGL VLTTDPKPRL RWTVELHERF VDAVTQLGGP DKATPKTIMR 60 VMGVKGLTLY HLKSHLQKFR LGKQPHKEFN DHSIKDGMRA SALELQRNTA SSSAMISRSM 120 NEMQMEVQRR LHEQLEVQKH LQLRIEAQGK YMQSILEKAC QTLAGENMAS GSYKGSIVNQ 180 SVHPNHHHSH HHHNHNHEMG STMKDFTSPL GFPSFQDLNI YGGGDHHQLD LQHNMERSSS 240 MDGFLPNNNN NTNNSSPNDT LCLGKKRTTT SPYSGSGKSP LIWSDDLRLQ DLGTAASCLG 300 EDQIQMALNS STERGGSEID SLSDIYETKP VISGDHMGPE KKFEGGTNSN KLERPSPRRA 360 PLSDRMSPMI QGRNSPYG

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MNAHAHSHER PMCVQGDSGL VLTTDPKPRL RWTVELHERF VDAVTQLGGP DKATPKTIMR  60
VMGVKGLTLY HLKSHLQKFR LGKQPHKEFN DHSIKDGMRA SALELQRNTA SSSAMISRSM  120
NEMQMEVQRR LHEQLEVQKH LQLRIEAQGK YMQSILEKAC QTLAGENMAS GSYKGSIVNQ  180
SVHPNHHHSH HHHNHNHEMG STMKDFTSPL GFPSFQDLNI YGGGDHHQLD LQHNMERSSS  240
MDGFLPNNNN NTNNSSPNDT LCLGKKRTTT SPYSGSGKSP LIWSDDLRLQ DLGTAASCLG  300
EDQIQMALNS STERGGSEID SLSDIYETKP VISGDHMGPE KKFEGGTNSN KLERPSPRRA  360
PLSDRMSPMI QGRNSPYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018818.1	0.0	myb family transcription factor APL isoform X1
Swissprot	Q9SAK5	1e-130	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2P5FM44	0.0	A0A2P5FM44_TREOI; Octamer-binding transcription factor
STRING	XP_010092480.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4964	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-130	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]