PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14673.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 778aa    MW: 86798.1 Da    PI: 6.0733
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14673.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-2058113156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  PK14673.1  58 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMK 113
                688899***********************************************998 PP
2START143.32.4e-452584902206
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                la +  +elvk+ ++++p+W ++s  eng+evl  +e ++                +++ea r++ vv+m++ +l e++ld + +W   ++    +a+tl
  PK14673.1 258 LATSSVNELVKMCQSGSPLWIRDS--ENGKEVLNVEEHARMfpwamnlkqnndssgFKTEATRDTDVVIMNSITLIESFLDCS-KWMDLFPsmvsRAKTL 354
                6778899*****************..*********9998889*****************************************.88777777777***** PP

                EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE...TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
      START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirq..lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvd 171
                +vi+++       g lql +aelq lsplvp R+  f+Ry++q  + + +w ivd  vds  +  + ++s+ R +++pSg++i++++ng+s vtwveh++
  PK14673.1 355 QVITTDasgqpinGSLQLVFAELQYLSPLVPtREAHFLRYCQQspDHERTWFIVDFPVDSFHDILQyQPSLPRYRRRPSGCIIQDMPNGYSSVTWVEHAE 454
                *******************************************9999999**********9999889********************************* PP

                --.SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 172 lk.grlphwllrslvksglaegaktwvatlqrqcek 206
                 + ++++h+ + ++v+sg+a+ga +w+a l+rqce+
  PK14673.1 455 IDqEKTVHQTFSHFVQSGMAFGAPRWLALLKRQCER 490
                *835778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1946116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2154123IPR009057Homeodomain-like
PROSITE profilePS5007116.95755115IPR001356Homeobox domain
SMARTSM003897.5E-1956119IPR001356Homeobox domain
PfamPF000466.0E-1858113IPR001356Homeobox domain
CDDcd000861.57E-1758116No hitNo description
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084840.923248493IPR002913START domain
SuperFamilySSF559611.09E-28249492No hitNo description
CDDcd088752.32E-105252489No hitNo description
SMARTSM002341.5E-31257490IPR002913START domain
PfamPF018524.2E-37258490IPR002913START domain
SuperFamilySSF559614.94E-14511738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MPYQPFSTIL PKEEHSLLHR GKDEMLESGS GSEQMEEKSG NEQENSSDQL LLQQQGKKKR  60
YHRHTARQIQ EMEALFKECP HPDDKQRMKL SQDLGLKPRQ VKFWFQNRRT QMKAQQDRND  120
NQILRAENET LKNENFQLQA ALRNASCPNC GSPAVMGEMG FDEQQLRLEN ARLREELDRY  180
YCMTPRFSSR TIGGGPHHPL MPPSLDLDIS IYSRHFPDQM ATGNGHNMVP VVPMLPHQEP  240
FPDNGLLLEE EKSLAIELAT SSVNELVKMC QSGSPLWIRD SENGKEVLNV EEHARMFPWA  300
MNLKQNNDSS GFKTEATRDT DVVIMNSITL IESFLDCSKW MDLFPSMVSR AKTLQVITTD  360
ASGQPINGSL QLVFAELQYL SPLVPTREAH FLRYCQQSPD HERTWFIVDF PVDSFHDILQ  420
YQPSLPRYRR RPSGCIIQDM PNGYSSVTWV EHAEIDQEKT VHQTFSHFVQ SGMAFGAPRW  480
LALLKRQCER IASLMARNIT DLGVMHSTDA RKNMMNLSQR MFRTFCVNIS TSGGQLWTAL  540
SDNPEDTVRI TTRKVTEPQP GQPNGLILSA VSTTFLPFPD YQVFNLLRDE GRRSQLEVLS  600
NGNSLQKIDH IANGSDPGNC ISLLRINVAS NSAQPMELML QESCTDKSGS VVVYSTMDVD  660
AIKLAMQGKD PSFIPILPSG FVIVPVELAS ENNNATGNKS GCLLTIGLQV LASPDPTAKL  720
SLPSVNAINN HLSNTIRQIM AALGSTAAAT TCADNNGGSG SSSGVDHGTA TTADGPSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096931.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_024021695.10.0homeobox-leucine zipper protein HDG5 isoform X1
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A2P5EIR00.0A0A2P5EIR0_TREOI; Octamer-binding transcription factor
STRINGXP_010096931.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]