PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14736.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 249aa    MW: 28291.6 Da    PI: 7.7034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14736.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-133586155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  PK14736.1 35 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 86
               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.56E-133390No hitNo description
SuperFamilySSF474591.31E-1733106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-143390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.3263485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-103586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-104091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
XFDALTGFPQ TTLTSTRPKR RRSRSRKNKE DIENQRMTHI AVERNRRKQM NEYLSVLRSL  60
MPDSYVQRGD QASIIGGAIN FVKELEQQVQ FLGAQKDHHQ SNNDHNQSSE DRELNMPFSE  120
FFTFPQYSTT SSNTATQCEN NSVMEAMAAG ESSRSAIADI EVTMVESHAS LKIRSKKRSK  180
QLLKMVSGLH NLRLTVLHLN VATQDQIILY SISVKVEDDC KLSSVDEIAT AVYQILATIQ  240
EESFIIMPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13546RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841767.11e-114PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2I4GCZ21e-113A0A2I4GCZ2_JUGRE; transcription factor bHLH94-like
STRINGGLYMA20G37550.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]