PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14809.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 214aa    MW: 25043.4 Da    PI: 6.5298
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14809.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1955108457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                ++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  PK14809.1  55 KRKLSDEQVNLLEMNFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 108
                45899***********************************************95 PP
2HD-ZIP_I/II121.44.7e-3954145293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ +d+++++++ Le+ev +L+e+l++
    PK14809.1  54 RKRKLSDEQVNLLEMNFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKKLEQEYSNLKKIHDSVVHDKCCLESEVLKLKEQLSN 145
                  8***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.71449109IPR001356Homeobox domain
SMARTSM003893.8E-1852113IPR001356Homeobox domain
CDDcd000865.52E-1654110No hitNo description
SuperFamilySSF466895.99E-1855117IPR009057Homeodomain-like
PfamPF000465.5E-1755108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-2156116IPR009057Homeodomain-like
PRINTSPR000319.1E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000319.1E-689105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNNTNNNQVE DHMVLYTQLY PGVYPQMVPQ QGETKTKRRR KKSKSAKEES ALARKRKLSD  60
EQVNLLEMNF GSEHKLESER KDRLAAELGL DPRQVAVWFQ NRRARWKNKK LEQEYSNLKK  120
IHDSVVHDKC CLESEVLKLK EQLSNAEMKI QRLTERVECV SSNSPSSSMS MEAVMDPPFL  180
GEFGVVEEYD DVFYVPDDNN PYINNGMEWM NLYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13755RRRKKSKSAKEESALARKR
23956RKKSKSAKEESALARKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021679570.16e-93homeobox-leucine zipper protein ATHB-40-like
SwissprotO232083e-74ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2P5BC591e-106A0A2P5BC59_PARAD; Octamer-binding transcription factor
STRINGXP_010099829.18e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-65homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]